Index

A

add() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) alpha0 (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) alphaL (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute)

alphaS (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) apply_oxygen_correction_alpha() (in module pymkm.biology.oxygen_effect) apply_oxygen_correction_beta() (in module pymkm.biology.oxygen_effect) apply_oxygen_effect (pymkm.mktable.MKTableParameters attribute)

B

base_points_b (pymkm.mktable.MKTableParameters attribute) base_points_r (pymkm.mktable.MKTableParameters attribute)

beta0 (pymkm.mktable.MKTableParameters attribute) (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute)

C

calculate_intersection_area() (pymkm.utils.geometry_tools.GeometryTools static method) compute() (in module pymkm.mktable.compute) (in module pymkm.sftable.compute) (pymkm.mktable.MKTable method) (pymkm.sftable.core.SFTable method) (pymkm.sftable.SFTable method)

compute_osmk_radioresistance() (in module pymkm.biology.oxygen_effect) compute_relative_radioresistance() (in module pymkm.biology.oxygen_effect) compute_saturation_parameter() (pymkm.physics.specific_energy.SpecificEnergy static method) (pymkm.physics.SpecificEnergy static method) compute_scaling_factors() (in module pymkm.biology.oxygen_effect) core_radius_type (pymkm.mktable.MKTableParameters attribute)

D

DEFAULT_TARGET (pymkm.io.stopping_power.StoppingPowerTable attribute) (pymkm.io.StoppingPowerTable attribute) determine_sampling_points() (pymkm.utils.geometry_tools.GeometryTools static method) display() (pymkm.mktable.MKTable method) (pymkm.sftable.core.SFTable method) (pymkm.sftable.SFTable method)

domain_radius (pymkm.mktable.MKTableParameters attribute) dose_averaged_specific_energy() (pymkm.physics.specific_energy.SpecificEnergy method) (pymkm.physics.SpecificEnergy method) dose_grid (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute)

E

energy_grid (pymkm.io.stopping_power.StoppingPowerTable property) (pymkm.io.StoppingPowerTable property)

F

f_rd_max (pymkm.mktable.MKTableParameters attribute) (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) f_z0_max (pymkm.mktable.MKTableParameters attribute) (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) filter_by_ions() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) from_default_source() (pymkm.io.StoppingPowerTableSet class method) (pymkm.io.table_set.StoppingPowerTableSet class method) from_dict() (pymkm.io.stopping_power.StoppingPowerTable static method) (pymkm.io.StoppingPowerTable static method) (pymkm.io.StoppingPowerTableSet class method) (pymkm.io.table_set.StoppingPowerTableSet class method) (pymkm.mktable.MKTableParameters class method) (pymkm.sftable.core.SFTableParameters class method) (pymkm.sftable.SFTableParameters class method)

from_directory() (pymkm.io.StoppingPowerTableSet class method) (pymkm.io.table_set.StoppingPowerTableSet class method) from_json() (pymkm.io.StoppingPowerTableSet class method) (pymkm.io.table_set.StoppingPowerTableSet class method) from_txt() (pymkm.io.stopping_power.StoppingPowerTable static method) (pymkm.io.StoppingPowerTable static method)

G

gamma (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) generate_default_radii() (pymkm.utils.geometry_tools.GeometryTools static method) GeometryTools (class in pymkm.utils.geometry_tools) get() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) get_available_ions() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) get_available_sources() (in module pymkm.io.data_registry)

get_common_energy_range() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) get_default_txt_path() (in module pymkm.io.data_registry) get_energy_grid() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) get_lookup_table() (pymkm.io.stopping_power.StoppingPowerTable class method) (pymkm.io.StoppingPowerTable class method) get_stopping_power() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) get_table() (pymkm.mktable.MKTable method)

I

initial_local_dose() (pymkm.physics.particle_track.ParticleTrack method) (pymkm.physics.ParticleTrack method) interpolate() (pymkm.io.stopping_power.StoppingPowerTable method) (pymkm.io.StoppingPowerTable method) (pymkm.utils.interpolation.Interpolator method) interpolate_all() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method)

Interpolator (class in pymkm.utils.interpolation) ion_name (pymkm.io.stopping_power.StoppingPowerTable property) (pymkm.io.StoppingPowerTable property) items() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method)

K

K (pymkm.mktable.MKTableParameters attribute) (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute)

keys() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method)

L

list_available_defaults() (in module pymkm.io.data_registry) load() (pymkm.io.StoppingPowerTableSet class method) (pymkm.io.table_set.StoppingPowerTableSet class method) (pymkm.mktable.MKTable method)

load_lookup_table() (in module pymkm.io.data_registry)

M

MKTable (class in pymkm.mktable) mktable (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) MKTableParameters (class in pymkm.mktable) model_name (pymkm.mktable.MKTableParameters attribute) model_version (pymkm.mktable.MKTable property) module pymkm.biology pymkm.biology.oxygen_effect pymkm.data pymkm.data.defaults pymkm.data.defaults.fluka_2020_0 pymkm.data.defaults.geant4_11_3_0 pymkm.data.defaults.mstar_3_12 pymkm.io pymkm.io.data_registry pymkm.io.stopping_power pymkm.io.table_set pymkm.mktable pymkm.mktable.compute pymkm.mktable.plot pymkm.physics pymkm.physics.particle_track pymkm.physics.specific_energy pymkm.sftable pymkm.sftable.compute pymkm.sftable.core pymkm.sftable.plot pymkm.utils pymkm.utils.geometry_tools pymkm.utils.interpolation pymkm.utils.parallel

N

nucleus_radius (pymkm.mktable.MKTableParameters attribute)

O

optimal_worker_count() (in module pymkm.utils.parallel)

P

ParticleTrack (class in pymkm.physics) (class in pymkm.physics.particle_track) plot() (in module pymkm.mktable.plot) (in module pymkm.sftable.plot) (pymkm.io.stopping_power.StoppingPowerTable method) (pymkm.io.StoppingPowerTable method) (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) (pymkm.mktable.MKTable method) (pymkm.sftable.core.SFTable method) (pymkm.sftable.SFTable method) pO2 (pymkm.mktable.MKTableParameters attribute) (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) pymkm.biology module pymkm.biology.oxygen_effect module pymkm.data module pymkm.data.defaults module pymkm.data.defaults.fluka_2020_0 module pymkm.data.defaults.geant4_11_3_0 module pymkm.data.defaults.mstar_3_12 module pymkm.io module pymkm.io.data_registry module

pymkm.io.stopping_power module pymkm.io.table_set module pymkm.mktable module pymkm.mktable.compute module pymkm.mktable.plot module pymkm.physics module pymkm.physics.particle_track module pymkm.physics.specific_energy module pymkm.sftable module pymkm.sftable.compute module pymkm.sftable.core module pymkm.sftable.plot module pymkm.utils module pymkm.utils.geometry_tools module pymkm.utils.interpolation module pymkm.utils.parallel module

R

remove() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) REQUIRED_DICT_KEYS (pymkm.io.stopping_power.StoppingPowerTable attribute) (pymkm.io.StoppingPowerTable attribute) REQUIRED_HEADER_KEYS (pymkm.io.stopping_power.StoppingPowerTable attribute) (pymkm.io.StoppingPowerTable attribute) resample() (pymkm.io.stopping_power.StoppingPowerTable method) (pymkm.io.StoppingPowerTable method)

resample_all() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) Rm (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute) Rmax (pymkm.mktable.MKTableParameters attribute) (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute)

S

saturation_corrected_single_event_specific_energy() (pymkm.physics.specific_energy.SpecificEnergy method) (pymkm.physics.SpecificEnergy method) save() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method) (pymkm.mktable.MKTable method) SFTable (class in pymkm.sftable) (class in pymkm.sftable.core) SFTableParameters (class in pymkm.sftable) (class in pymkm.sftable.core) single_event_specific_energy() (pymkm.physics.specific_energy.SpecificEnergy method) (pymkm.physics.SpecificEnergy method)

SpecificEnergy (class in pymkm.physics) (class in pymkm.physics.specific_energy) stopping_power (pymkm.io.stopping_power.StoppingPowerTable property) (pymkm.io.StoppingPowerTable property) StoppingPowerTable (class in pymkm.io) (class in pymkm.io.stopping_power) StoppingPowerTableSet (class in pymkm.io) (class in pymkm.io.table_set) summary() (pymkm.mktable.MKTable method) (pymkm.sftable.core.SFTable method) (pymkm.sftable.SFTable method)

T

to_dict() (pymkm.io.stopping_power.StoppingPowerTable method) (pymkm.io.StoppingPowerTable method) (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method)

to_json() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method)

U

use_stochastic_model (pymkm.mktable.MKTableParameters attribute)

V

values() (pymkm.io.StoppingPowerTableSet method) (pymkm.io.table_set.StoppingPowerTableSet method)

W

write_txt() (pymkm.mktable.MKTable method)

Z

z0 (pymkm.mktable.MKTableParameters attribute)

zR (pymkm.sftable.core.SFTableParameters attribute) (pymkm.sftable.SFTableParameters attribute)